Pyrroloquinoline scaffold-based 5-HT6R ligands: Synthesis, quantum chemical and molecular dynamic studies, and influence of nitrogen atom position in the scaffold on affinity

Bioorg Med Chem. 2018 Jul 23;26(12):3588-3595. doi: 10.1016/j.bmc.2018.05.033. Epub 2018 May 23.

Abstract

Based on pyrroloquinoline scaffold bearing 5-HT2C agonists, a series of arylsulfonamide derivatives of 1H-pyrrolo[2,3-f]quinoline and 1H-pyrrolo[3,2-h]quinoline, substituted at position 3 with tetrahydropyridine, were synthesized and evaluated in vitro for their affinity for 5-HT6 receptors. A structure-activity relationship study showed that the 1H-pyrrolo[3,2-h]quinoline scaffold was more favorable for 5-HT6R binding than the 1H-pyrrolo[2,3-f]quinoline one, suggesting dependence upon the type of condensation of the pyrrole and quinoline rings. As revealed by quantum-chemical calculations and molecular dynamic studies, position of the quinoline nitrogen atom in the planar pyrroloquinoline skeleton might affect the spatial orientation of the arylsulfonyl fragment, as a result of structure stabilization by internal hydrogen bonds.

Keywords: 1H-Pyrrolo[2,3-f]quinoline; 1H-Pyrrolo[3,2-h]quinoline; 5-HT(6) receptor; Arylsulfonyl-pyrroloquinoline derivatives; Halogen bonding; Hydrogen bonding; Molecular dynamic; Quantum chemical calculations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • HEK293 Cells
  • Humans
  • Hydrogen Bonding
  • Ligands
  • Molecular Dynamics Simulation
  • Nitrogen / chemistry*
  • Protein Structure, Tertiary
  • Pyrroles / chemical synthesis
  • Pyrroles / chemistry*
  • Pyrroles / metabolism
  • Quantum Theory*
  • Quinolines / chemical synthesis
  • Quinolines / chemistry*
  • Quinolines / metabolism
  • Receptors, Serotonin / chemistry
  • Receptors, Serotonin / metabolism*
  • Structure-Activity Relationship

Substances

  • Ligands
  • Pyrroles
  • Quinolines
  • Receptors, Serotonin
  • pyrroloquinoline
  • serotonin 6 receptor
  • Nitrogen